Which front-end are you using? I think that I have found a difference with the GPU acceleration between using OrCAD Capture / Design Entry CIS for the netlist and using Design Entry HDL / System Capture for the netlist. The Shape Transparency works as expected, and is controlled by the Display Settings, for the Design Entry HDL / System Capture netlist case but they seem to be resolutely "solid" for the OrCAD Capture / Design Entry CIS case. I do admit to only checking two designs but there is a difference.
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